Torsten Seemann

:zap: :aquarius: Rapid prokaryotic genome annotation

:scissors: :zap: Rapid haploid variant calling and core genome alignment

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

:microscope: :leo: Microbial RNA annotation

:id: Scan contig files against PubMLST typing schemes

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

Pairwise SNP distance matrix from a FASTA sequence alignment

Convert various sequence formats to FASTA

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

Filter SAM file for soft and hard clipped alignments